Q. The gapped portion in the diagonals represents matches in FASTA.

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Q. The initiation of FASTA format has ____ symbol.

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Q. The rigorous dynamic programming method is normally not used for database searching because it is slow and computationally expensive.

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Q. FASTA and BLAST are __________ but __________ for larger datasets.

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Q. Scan PS is a web-based program that implements a modified version of the Needleman-Wunsch algorithm.

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Q. Par Align is a web-based server that uses parallel processors to perform exhaustive sequence comparisons using either a parallelized version of the Smith–Waterman algorithm or a heuristic program for further speed gains.

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Q. In Smith–Waterman algorithm, in initialization Step, the _________ row and ________ column are subject to gap penalty.

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Q. Local sequence alignments are necessary for many cases out of which one is repeated.

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Q. In SW algorithm, to align two sequences of lengths of m and n _________ time is required.

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Q. One of the challenges in SWA is obtaining correct alignments in regions of low similarity between distantly related biological sequences.

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Q. Score can be negative in Smith–Waterman algorithm.

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Q. The function of the scoring matrix is to conduct one-to-one comparisons between all components in two sequences and record the optimal alignment results.

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