Q. A multiple sequence alignment or a motif is often represented by a graphic representation called a ______

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Q. The overall height of a logo position reflects how conserved the position is, and the _____ of each letter in a position reflects the _______ of the residue in the alignment.

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Q. Conserved positions have _____ residues and bigger symbols.

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Q. _______ is an interactive program for generating sequence logos.

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Q. Which of the following is not a software for dot plot analysis?

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Q. The softwares for dot plot analysis perform several tasks. Which one of them is not performed by them?

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Q. For palindromic sequences, what is the structure of the dot plot?

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Q. For significantly aligning sequences what is the resulting structure on the plot?

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Q. When was the dot plot method, first described?

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Q. Who were the inventors of dot plot method?

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Q. Which of the following is true for EMBOSS Dottup?

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Q. Isolated dots that are not on the diagonal represent exact matches.

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Q. Vertical frame shifts show ______ while the horizontal ones show _______

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Q. Dot plot of repeating elements would be small crosses on plot.

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Q. Use of the dynamic programming method requires a scoring system for the comparison of symbol pairs, and a scheme for GAP penalties.

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Q. After the derivation, the outputs of the dynamic programming are the ratios are called even scores.

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Q. The matrices PAM250 and BLOSUM62 contain _______

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Q. The higher is the score in the alignment _________

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Q. Gaps are added to the alignment because it ______

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Q. Which of the following is not a description of dynamic programming algorithm?

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