Question

An all-against-all analysis requires first making a database of the proteome. This database is then sequentially searched by each individual protein sequence of the proteome using a rapid database similarity search tool such as _______

a.

XPBLAST

b.

WU-BLAST

c.

BLAST

d.

FASTA

Posted under Bioinformatics

Answer: (a).XPBLAST

Interact with the Community - Share Your Thoughts

Uncertain About the Answer? Seek Clarification Here.

Understand the Explanation? Include it Here.

Q. An all-against-all analysis requires first making a database of the proteome. This database is then sequentially searched by each individual protein sequence of the proteome using...

Similar Questions

Explore Relevant Multiple Choice Questions (MCQs)

Q. Evolutionary modeling can include various types of analyses. Which is mostly not one of them?

Q. Which of the given statement is incorrect about Clusters of functionally related genes?

Q. Which of the given statement is incorrect about Orthologs?

Q. In protein/domain analysis, each protein in the predicted proteome is again used as a query of a curated protein sequence database such as ____ in order to locate similar domains and sequences. To find orthologs, very low E value scores (E<10<20) for the alignment score and an alignment that includes 60–80% of the query sequence are generally required in order to avoid matches to paralogs.

Q. In all-against-all self comparison, A comparison is made in which every protein is used as a query in a similarity search against a database composed of the rest of the proteome, and the significant matches are identified by a low expect value.

Q. Processed pseudogenes are also derived from a functional gene and they contain introns and a promoter.

Q. Pseudogenes are DNA sequences that were derived from distinct genes but which have acquired mutations that are deleterious to function in the same period of time.

Q. New gene functions are thought to be gained by duplication of an existing gene creating two tandem copies.

Q. Comparative genomics includes a comparison of gene number, gene content, and gene location in both prokaryotic and eukaryotic groups of organisms.

Q. Which of the following information Sequence comparisons do not provide?

Q. Which of the given statements is incorrect?

Q. Which of the given statements is incorrect?

Q. Which of the given statements is incorrect?

Q. Which of the given statements is incorrect about All-against-all Self-comparison?

Q. Which of the given statements is incorrect about Cluster analysis?

Q. Which of the given statements is incorrect about Clustering by making subgraphs?

Q. Which of the given statements is incorrect about Clustering by single linkage?

Q. The all-against-all analyses provide an indication as to the number of protein/gene families in an organism. This number represents the core proteome of the organism from which all biological functions have diversified.

Q. Which of the given statements is incorrect about Grouping Sequences?

Q. Which of the given statements is incorrect about Clusters of orthologous groups?

Recommended Subjects

Are you eager to expand your knowledge beyond Bioinformatics? We've handpicked a range of related categories that you might find intriguing.

Click on the categories below to discover a wealth of MCQs and enrich your understanding of various subjects. Happy exploring!