Q. Which of the following does not describe BLOSUM matrices?

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Q. Which of the following is untrue regarding the gap penalty used in dynamic programming?

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Q. Among the following which one is not the approach to the local alignment?

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Q. Which of the following does not describe k-tuple methods?

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Q. Which of the following does not describe BLAST?

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Q. Which of the following is untrue regarding BLAST and FASTA?

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Q. For what type of sequences Gibbs sampling is used?

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Q. Which of the following is untrue about Expectation Maximization (EM) method?

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Q. Which of the following is true about Expectation Maximization (EM) method?

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Q. MEME stands for _____________

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Q. In the web-based program MEME, the computation is a _____ step procedure.

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Q. Gibbs is a web-based program that uses the Gibbs sampling approach to look for _____ gap-free segments for either DNA or protein sequences.

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Q. A multiple sequence alignment or a motif is often represented by a graphic representation called a ______

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Q. The overall height of a logo position reflects how conserved the position is, and the _____ of each letter in a position reflects the _______ of the residue in the alignment.

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Q. Conserved positions have _____ residues and bigger symbols.

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Q. _______ is an interactive program for generating sequence logos.

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Q. Which of the following is not a software for dot plot analysis?

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Q. The softwares for dot plot analysis perform several tasks. Which one of them is not performed by them?

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Q. For palindromic sequences, what is the structure of the dot plot?

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Q. For significantly aligning sequences what is the resulting structure on the plot?

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