Q. rVISTA uses two orthologous sequences as input and first identifies all putative regulatory motifs based on TRANSFAC matches.

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Q. Which of the following is untrue about ConSite?

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Q. A caveat of phylogenetic footprinting is to extract noncoding sequences Upstream of corresponding genes and focus the comparison to this region only, which helps to prevent false positives.

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Q. Which of the following is incorrect regarding Phylogenetic Footprinting–Based Method?

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Q. In CONPRO, for each program, the highest score prediction is taken as the promoter in the region.

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Q. Which of the following is incorrect regarding CONPRO?

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Q. TSSW is a web program that distinguishes promoter sequences from non-promoter sequences based on a combination of unique content information such as hexamer/trimer frequencies and signal information such the TATA box in the promoter region.

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Q. The input for the neural network includes parameters for sequence physical properties, such as ______

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Q. McPromoter, a web-based program, uses a neural network to make promoter predictions.

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Q. Which of the following is incorrect regarding First EF?

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Q. Which of the following is incorrect regarding Cluster-Buster?

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Q. Which of the following is incorrect regarding Eponine?

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Q. CpGProD is a web-based program that predicts promoters containing a high density of CpG islands _______

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Q. The eukaryotic transcription initiation is less dependent on transcription factors.

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Q. To increase the specificity of prediction, a unique feature of eukaryotic promoter is employed, which is the presence of CpG islands.

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Q. Which of the following is incorrect regarding the Prediction for Eukaryotes?

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Q. Which of the following is incorrect regarding FindTerm?

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Q. In BPROM, once the operons are assigned, the program is able to predict putative promoter sequences.

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Q. Which of the following is incorrect regarding BPROM?

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Q. Which of the following is correct regarding the method for prokaryotic operon prediction?

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