Gene and Promoter Prediction MCQs

Welcome to our comprehensive collection of Multiple Choice Questions (MCQs) on Gene and Promoter Prediction, a fundamental topic in the field of Bioinformatics. Whether you're preparing for competitive exams, honing your problem-solving skills, or simply looking to enhance your abilities in this field, our Gene and Promoter Prediction MCQs are designed to help you grasp the core concepts and excel in solving problems.

In this section, you'll find a wide range of Gene and Promoter Prediction mcq questions that explore various aspects of Gene and Promoter Prediction problems. Each MCQ is crafted to challenge your understanding of Gene and Promoter Prediction principles, enabling you to refine your problem-solving techniques. Whether you're a student aiming to ace Bioinformatics tests, a job seeker preparing for interviews, or someone simply interested in sharpening their skills, our Gene and Promoter Prediction MCQs are your pathway to success in mastering this essential Bioinformatics topic.

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Gene and Promoter Prediction MCQs | Page 7 of 9

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Q61.
Which of the following is incorrect regarding the Prediction for Eukaryotes?

a.

The consensus patterns are only derived from bioinformatics studies

b.

The experimentally determined DNA binding sites are compiled into profiles and stored in a database for scanning an unknown sequence to find similar conserved patterns

c.

The consensus patterns are derived from experimentally determined DNA binding sites

d.

The ab initio method for predicting eukaryotic promoters and regulatory elements relies on searching the input sequences for matching of consensus patterns of known promoters and regulatory elements

Discuss
Answer: (a).The consensus patterns are only derived from bioinformatics studies
Q62.
To increase the specificity of prediction, a unique feature of eukaryotic promoter is employed, which is the presence of CpG islands.

a.

True

b.

False

c.

May be True or False

d.

Can't say

Discuss
Answer: (a).True
Q63.
The eukaryotic transcription initiation is less dependent on transcription factors.

a.

True

b.

False

c.

May be True or False

d.

Can't say

Discuss
Answer: (b).False
Q64.
CpGProD is a web-based program that predicts promoters containing a high density of CpG islands _______

a.

in archea genomic sequences

b.

in mammalian genomic sequences

c.

in eukaryotic and bacterial genomic sequences

d.

only in bacterial genomic sequences

Discuss
Answer: (b).in mammalian genomic sequences
Q65.
Which of the following is incorrect regarding Eponine?

a.

It is a web-based program that predicts transcription start sites

b.

It is a web-based program that particularly predicts tranpososons and retropososons

c.

The regulatory sites include the TATA box, the CCAAT box, and CpG islands

d.

It is based on a series of pre-constructed PSSMs of several regulatory sites

Discuss
Answer: (b).It is a web-based program that particularly predicts tranpososons and retropososons
Q66.
Which of the following is incorrect regarding Cluster-Buster?

a.

It is an HMM-based web-based program

b.

A query sequence is scanned with a window size of 1 kb for putative regulatory motifs using motif HMMs

c.

It works by detecting a region of high concentration of unknown transcription factor binding sites and regulatory motifs at the initiation

d.

It is designed to find clusters of regulatory binding sites

Discuss
Answer: (c).It works by detecting a region of high concentration of unknown transcription factor binding sites and regulatory motifs at the initiation
Q67.
Which of the following is incorrect regarding First EF?

a.

It is a program that predicts promoters for bacterial DNA

b.

It is a web-based program that predicts promoters for human DNA

c.

It stands for First Exon Finder

d.

It integrates gene prediction with promoter prediction

Discuss
Answer: (a).It is a program that predicts promoters for bacterial DNA
Q68.
McPromoter, a web-based program, uses a neural network to make promoter predictions.

a.

True

b.

False

c.

May be True or False

d.

Can't say

Discuss
Answer: (a).True
Q69.
The input for the neural network includes parameters for sequence physical properties, such as ______

a.

DNA bendability

b.

Signals such as the TATA box

c.

Signals such as initiator box

d.

Signals such as CpAA islands

Discuss
Answer: (d).Signals such as CpAA islands
Q70.
TSSW is a web program that distinguishes promoter sequences from non-promoter sequences based on a combination of unique content information such as hexamer/trimer frequencies and signal information such the TATA box in the promoter region.

a.

True

b.

False

c.

May be True or False

d.

Can't say

Discuss
Answer: (a).True
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