Gene and Promoter Prediction MCQs

Welcome to our comprehensive collection of Multiple Choice Questions (MCQs) on Gene and Promoter Prediction, a fundamental topic in the field of Bioinformatics. Whether you're preparing for competitive exams, honing your problem-solving skills, or simply looking to enhance your abilities in this field, our Gene and Promoter Prediction MCQs are designed to help you grasp the core concepts and excel in solving problems.

In this section, you'll find a wide range of Gene and Promoter Prediction mcq questions that explore various aspects of Gene and Promoter Prediction problems. Each MCQ is crafted to challenge your understanding of Gene and Promoter Prediction principles, enabling you to refine your problem-solving techniques. Whether you're a student aiming to ace Bioinformatics tests, a job seeker preparing for interviews, or someone simply interested in sharpening their skills, our Gene and Promoter Prediction MCQs are your pathway to success in mastering this essential Bioinformatics topic.

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Gene and Promoter Prediction MCQs | Page 8 of 9

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Q71.
Which of the following is incorrect regarding CONPRO?

a.

It is a web-based program that uses a consensus method

b.

It is used to identify promoter elements for human DNA

c.

cDNA does not play a role in prediction

d.

The program uses the information to search the human genome database for the position of the gene

Discuss
Answer: (c).cDNA does not play a role in prediction
Q72.
In CONPRO, for each program, the highest score prediction is taken as the promoter in the region.

a.

True

b.

False

c.

May be True or False

d.

Can't say

Discuss
Answer: (a).True
Q73.
Which of the following is incorrect regarding Phylogenetic Footprinting–Based Method?

a.

It is possible to obtain promoter sequences for a particular gene through comparative analysis

b.

The conservation from closely related organisms is both at the sequence level and at the level of organization of the elements

c.

The conservation from closely related organisms is most at the sequence level

d.

It has been observed that promoter and regulatory elements from closely related organisms such as human and mouse are highly conserved

Discuss
Answer: (c).The conservation from closely related organisms is most at the sequence level
Q74.
A caveat of phylogenetic footprinting is to extract noncoding sequences Upstream of corresponding genes and focus the comparison to this region only, which helps to prevent false positives.

a.

True

b.

False

c.

May be True or False

d.

Can't say

Discuss
Answer: (a).True
Q75.
Which of the following is untrue about ConSite?

a.

It is a web server that finds putative promoter elements

b.

It includes comparing two orthologous sequences

c.

The program does not accept pre-computed alignment

d.

The program accepts pre-computed alignment

Discuss
Answer: (c).The program does not accept pre-computed alignment
Q76.
rVISTA uses two orthologous sequences as input and first identifies all putative regulatory motifs based on TRANSFAC matches.

a.

True

b.

False

c.

May be True or False

d.

Can't say

Discuss
Answer: (a).True
Q77.
Which of the following is untrue about Bayes Aligner?

a.

Posterior probability values, which are considered estimates of the true alignment, are calculated for each alignment

b.

The method generates a single best alignment

c.

It aligns two sequences using a Bayesian algorithm which is a unique sequence alignment method

d.

It is a web-based footprinting program

Discuss
Answer: (b).The method generates a single best alignment
Q78.
Which of the following is untrue about FootPrinter?

a.

It is a web-based program for phylogenetic footprinting using multiple input sequences

b.

The motifs from organisms spanning over the widest evolutionary distances are identified as promoter or regulatory motifs

c.

The program performs multiple alignment of the input sequences to identify conserved motifs

d.

The user does not necessarily provides a phylogenetic tree that defines the evolutionary relationship of the input sequences

Discuss
Answer: (d).The user does not necessarily provides a phylogenetic tree that defines the evolutionary relationship of the input sequences
Q79.
Which of the following is untrue?

a.

MEME is the EM based program only for protein motif discovery

b.

AlignACE is a web-based program using the Gibbs sampling algorithm to find common motifs

c.

AlignACE is optimized for DNA sequence motif extraction

d.

Melina stands for Motif Elucidator In Nucleotide sequence Assembly

Discuss
Answer: (a).MEME is the EM based program only for protein motif discovery
Q80.
Which of the following is untrue about Expression Profiling–Based Method?

a.

Genes with similar expression profiles are considered coexpressed, which can be identified through a clustering approach

b.

This approach appears to be less effective for finding transcription factor binding sites

c.

An advanced alignment-independent profile construction method such as EM and Gibbs motif sampling is often used in finding the subtle sequence motifs

d.

The basis for coexpression is thought to be due to common promoters and regulatory elements

Discuss
Answer: (b).This approach appears to be less effective for finding transcription factor binding sites
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